If you feel like your installation quote is too much, you'd want to know how much "custom" stuff they'd be getting involved with.
Like I alluded to in my post above, if your car still has the original wiring and fuel system, it's a crap shoot as to whether either system is viable for an EFI conversion but it's be a safe bet it's not. The shop probably figured on all new parts, even if the install kit is just a basic one with rubber lines.
If you are planning on a Sniper system, the universal wiring harness they provide sucks. When I did mine, I basically made an entirely new harness from scratch. I ended up re-pinning every connector and ran all new wires to make things fit. If the shop has done a few of them, they'd likely be aware of that and would charge accordingly to cover all the custom wiring they'd have to get involved with. Same with the plumbing.
Name brand EFI is not cheap either even basic systems are going to be way over the $1,000 initial price. Add up fittings and accessories and time involved and you're way over that when you're done.
Also, if using a Sniper, it's usually good to buy the ignition box and distributor so the EFI can control timing. Almost kind of pointless to do it otherwise but there are people out there who do it. Just easier to have the ECU control the timing, things are much more precise which is generally why you would chose EFI in the first place.
And don't forget after the install, you'd want to get comfortable with tuning by laptop and reading and interpreting datalogs to tune the car. If the shop that installs the system does that, you're paying them for time and expertise with the hope they know what they're doing.
Just some things to think about!