Every aftermarket electrical accessory made comes with instructions that say the power needs to be connected directly to the battery. Biggest reason for that is the average installer can’t identify a proper alternate power source connection. For some audio equipment it’s to address noise concerns. For 98% of vehicles on the road this does not create any issues at all. On a car designed with an ammeter, under sized wires, and under rated quick connects between the battery and alternator any loads added to the battery are in fact also added to this charging circuit when the car is running. When running, all loads are getting power from the alternator not the battery ideally.
Assuming the new harness is a reproduction of the originals, using original specs, 12ga charge circuit wires, even with the ammeter by-passed, you still are running the added loads through the Packard terminals in the bulkhead connector and under sized wires. I would not recommend a larger alternator wired this way with any loads added at the battery.
The fans would be better off connected to the alternator stud if you want to run the factory speced wiring and not over stress them.
BTW, it’s a myth that Mopar passenger car ammeters spontaneously combust. The weak link is the bulkhead connectors, always was. Add heavy loads to the battery on an old Mopar, you will quickly find the weak connections in the original wiring. Sometimes it's ammeter connections.