OP, if you flashed the software and the system started operating correctly, I'll share a bit of knowledge with you. If a holley equipped vehicle has the battery connected and the battery goes dead, even drops below 9 V while cranking, it can corrupt the firmware, requiring a reflash of the firmware. This isn't the same as disconnecting the battery, it's a slow drain of it. I've seen fuel injectors go wide open, ignition timing be so retarded it makes headers glow at idle, etc. Is it optimum, no, does the unit work great, yes. It's a pita, but the system is pretty solid other than that. I was made aware of this by one of the Holley engineers and there's some threads on their forum about it.